STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_2609Beta-galactosidase; PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 TIM barrel; KEGG: sit:TM1040_3871 beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family. (738 aa)    
Predicted Functional Partners:
uxaC
PFAM: Glucuronate isomerase; KEGG: bvu:BVU_3074 glucuronate isomerase.
 
 
 0.930
Dfer_4626
PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: sus:Acid_6718 GHMP kinase.
     
  0.900
Dfer_3298
PFAM: coagulation factor 5/8 type domain protein; Fibronectin type III domain protein; KEGG: bfs:BF4166 xylosidase/arabinosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
  0.852
Dfer_5268
PFAM: glycoside hydrolase family 39; KEGG: sus:Acid_3646 glycoside hydrolase family protein.
  
  
  0.833
Dfer_0650
PFAM: glycoside hydrolase family 43; KEGG: bth:BT_4095 beta-xylosidase (1,4-beta-D-xylan xylosidase); Belongs to the glycosyl hydrolase 43 family.
 
  
  0.832
Dfer_0745
PFAM: glycoside hydrolase family 43; KEGG: bth:BT_3108 putative beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
  0.825
Dfer_2608
TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: ote:Oter_2893 Na+/solute symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
   
 0.818
Dfer_2610
KEGG: hypothetical protein.
 
     0.816
Dfer_2396
PFAM: class II aldolase/adducin family protein; KEGG: fjo:Fjoh_1120 L-ribulose-5-phosphate 4- epimerase.
   
 
 0.808
Dfer_2603
PFAM: RagB/SusD domain protein; KEGG: bvu:BVU_1712 hypothetical protein.
 
     0.756
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.