STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_2666KEGG: sus:Acid_2933 hypothetical protein. (120 aa)    
Predicted Functional Partners:
mobA
Molybdopterin-guanine dinucleotide biosynthesis protein B; Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo-MPT) cofactor (Moco or molybdenum cofactor) to form Mo-molybdopterin guanine dinucleotide (Mo-MGD) cofactor.
 
     0.864
Dfer_2667
KEGG: mxa:MXAN_4341 oxidoreductase alpha (molybdopterin) subunit; TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
     0.863
fdhD
Formate dehydrogenase family accessory protein FdhD; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.
 
     0.860
Dfer_2668
PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: fjo:Fjoh_3520 glycerophosphoryl diester phosphodiesterase.
       0.568
Dfer_2663
KEGG: ote:Oter_0810 hypothetical protein.
       0.560
Dfer_3176
PFAM: glycosidase PH1107-related; Glycosyl hydrolase family 32 domain protein; KEGG: bth:BT_4094 hypothetical protein.
  
     0.546
Dfer_0828
PFAM: GCN5-related N-acetyltransferase; KEGG: bcl:ABC0710 ribosomal-protein-alanine acetyltransferase.
  
     0.471
Dfer_0311
PFAM: Pyrrolo-quinoline quinone; cytochrome c class I; SMART: Pyrrolo-quinoline quinone; KEGG: ote:Oter_0062 pyrrolo-quinoline quinone.
  
     0.435
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.