STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_2784TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: bvu:BVU_2369 thioredoxin; Belongs to the thioredoxin family. (127 aa)    
Predicted Functional Partners:
Dfer_0369
PFAM: response regulator receiver; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; SMART: response regulator receiver; KEGG: gvi:glr0480 thioredoxin reductase carring response regulator receiver domain.
  
 
 0.866
fusA
Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...]
  
 
 
 0.844
Dfer_2783
PFAM: acyltransferase 3; KEGG: rpt:Rpal_2446 acyltransferase 3.
       0.773
Dfer_0086
TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: chu:CHU_1778 thioredoxin-disulfide reductase.
 
 
 0.747
Dfer_2785
PFAM: pentapeptide repeat protein; KEGG: chu:CHU_1685 pentapeptide repeat-containing protein.
   
   0.744
Dfer_1046
KEGG: esi:Exig_2397 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
 
 
 0.743
Dfer_5479
PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: chu:CHU_3776 glutamate synthase (NADH) large subunit.
   
 
 0.695
groL
Chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
   
 
 0.674
Dfer_0402
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: chu:CHU_2572 alkyl hydroperoxide reductase, F52a subunit.
  
 
 0.660
Dfer_0407
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: gfo:GFO_0125 thioredoxin reductase.
  
 
 0.660
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.