STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_2907PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: pmt:PMT0296 TPR repeat-containing protein. (471 aa)    
Predicted Functional Partners:
Dfer_0572
PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: glo:Glov_1080 peptidase C14 caspase catalytic subunit P20.
 
     0.855
Dfer_1220
PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: chu:CHU_1642 TPR repeat-containing protein.
 
 
 0.817
Dfer_1054
PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: mar:MAE_58050 tetratricopeptide TPR_2.
 
    
0.814
Dfer_2891
PFAM: WD-40 repeat protein; SMART: WD-40 repeat protein; KEGG: chu:CHU_0759 WD-40 repeat-containing protein.
  
 0.799
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.759
Dfer_5199
ATP-binding region ATPase domain protein; Molecular chaperone. Has ATPase activity.
   
 0.734
Dfer_2755
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: TPR Domain containing protein.
  
     0.722
Dfer_2954
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; RNA- processing protein HAT helix repeating-containing protein; KEGG: chu:CHU_0003 TPR repeat-containing protein.
 
    
0.693
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
 
 0.633
Dfer_1807
PFAM: Ankyrin; SMART: Ankyrin; KEGG: aas:Aasi_1435 hypothetical protein.
  
 0.586
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.