STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_2976PFAM: protein of unknown function DUF1080; SMART: PBS lyase HEAT domain protein repeat- containing protein; KEGG: pdi:BDI_1153 hypothetical protein. (1145 aa)    
Predicted Functional Partners:
Dfer_2975
PFAM: oxidoreductase domain protein; KEGG: pdi:BDI_1154 NADH-dependent dehydrogenase.
 
     0.911
Dfer_3436
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: pdi:BDI_1903 hypothetical protein.
  
     0.704
Dfer_1389
PFAM: RagB/SusD domain protein; KEGG: bvu:BVU_1782 hypothetical protein.
  
     0.613
Dfer_4489
PFAM: oxidoreductase domain protein; KEGG: bth:BT_3581 putative dehydrogenase and relate proteins.
 
     0.602
Dfer_4183
PFAM: RagB/SusD domain protein; KEGG: bvu:BVU_1782 hypothetical protein.
  
     0.585
Dfer_4303
PFAM: oxidoreductase domain protein; KEGG: ote:Oter_4329 oxidoreductase domain- containing protein.
 
     0.583
Dfer_4493
PFAM: oxidoreductase domain protein; KEGG: bth:BT_3586 putative dehydrogenase.
  
     0.571
Dfer_2130
PFAM: protein of unknown function DUF1080; KEGG: smt:Smal_1044 protein of unknown function DUF1080.
 
     0.565
Dfer_2872
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sus:Acid_0027 xylose isomerase domain- containing protein.
  
     0.564
Dfer_2873
PFAM: oxidoreductase domain protein; KEGG: sus:Acid_6145 oxidoreductase domain- containing protein.
  
     0.562
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.