STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_3003Cellulose 1,4-beta-cellobiosidase; PFAM: glycoside hydrolase family 9; glycoside hydrolase family 9 domain protein Ig domain protein; KEGG: sus:Acid_2606 cellulase. (900 aa)    
Predicted Functional Partners:
Dfer_2105
PFAM: glycoside hydrolase family 9; KEGG: sde:Sde_0558 regulatory protein, LacI.
  
  
 
0.929
Dfer_5683
Cellulose 1,4-beta-cellobiosidase; PFAM: glycoside hydrolase family 9; glycoside hydrolase family 9 domain protein Ig domain protein; KEGG: chu:CHU_1280 endoglucanase.
  
  
 
0.927
Dfer_0289
PFAM: glycoside hydrolase family 5; KEGG: dth:DICTH_0508 endoglucanase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
 
 0.917
Dfer_4512
PFAM: Carbohydrate binding family 6; SMART: cellulose binding type IV; KEGG: sde:Sde_3003 hypothetical protein.
  
 
 0.906
Dfer_4868
Beta-galactosidase; KEGG: fjo:Fjoh_4857 beta-glucosidase; TIGRFAM: beta-galactosidase; PFAM: glycoside hydrolase family 1.
    
 0.903
Dfer_3042
Cellulose synthase (UDP-forming); PFAM: glycosyl transferase family 2; glycoside hydrolase family 2 TIM barrel; KEGG: scl:sce4866 integral membrane glycosyltransferase.
     
  0.900
Dfer_0796
Endo-1,4-beta-xylanase; KEGG: dth:DICTH_1538 glycosyl hydrolase family 10; PFAM: glycoside hydrolase family 10; SMART: glycoside hydrolase family 10.
 
   
 0.715
Dfer_0823
PFAM: glycoside hydrolase family 43; KEGG: bth:BT_0369 endo-1,4-beta-xylanase D precursor; Belongs to the glycosyl hydrolase 43 family.
  
  
 0.615
Dfer_0795
Xylan 1,4-beta-xylosidase; PFAM: glycoside hydrolase family 43; KEGG: sde:Sde_0822 alpha-L-arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family.
  
  
 0.560
Dfer_3004
PFAM: band 7 protein; SMART: band 7 protein; KEGG: afw:Anae109_0935 band 7 protein.
       0.500
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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