STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_3022TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; Kelch repeat-containing protein; Kelch repeat protein; KEGG: rba:RB3349 putative sodium:solute symporter. (883 aa)    
Predicted Functional Partners:
Dfer_3023
PFAM: dihydrodipicolinate synthetase; KEGG: rba:RB3352 N-acetylneuraminate lyase; Belongs to the DapA family.
 
  
 0.907
Dfer_3021
PFAM: protein of unknown function DUF303 acetylesterase putative; KEGG: bvu:BVU_4140 sialate O-acetylesterase.
     0.855
Dfer_3020
Exo-alpha-sialidase; KEGG: sma:SAV_5934 neuramidase.
 
     0.854
Dfer_3025
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bfr:BF1710 hypothetical protein.
 
     0.775
Dfer_3024
PFAM: RagB/SusD domain protein; KEGG: bfs:BF1721 hypothetical protein.
 
     0.753
Dfer_4393
PFAM: Proline dehydrogenase; KEGG: fjo:Fjoh_2814 proline dehydrogenase.
  
  
 0.655
Dfer_3026
PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bfs:BF3714 GntR family regulatory protein.
 
   
 0.632
Dfer_5167
PFAM: Relaxase/mobilization nuclease family protein; KEGG: pgn:PGN_0925 putative mobilization protein.
  
    0.405
Dfer_1905
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bvu:BVU_4145 hypothetical protein.
  
     0.404
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.