STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_3041KEGG: xca:xccb100_3615 putative secreted protein. (425 aa)    
Predicted Functional Partners:
Dfer_3042
Cellulose synthase (UDP-forming); PFAM: glycosyl transferase family 2; glycoside hydrolase family 2 TIM barrel; KEGG: scl:sce4866 integral membrane glycosyltransferase.
 
   
 0.951
Dfer_3043
KEGG: rsq:Rsph17025_1334 beta-mannanase-like protein; Belongs to the glycosyl hydrolase 26 family.
 
     0.740
Dfer_5721
PFAM: protein of unknown function DUF187; KEGG: mes:Meso_4442 hypothetical protein.
 
 
 0.725
Dfer_0403
TIGRFAM: membrane-bound dehydrogenase domain protein; KEGG: rba:RB3322 cytochrome c.
  
     0.656
Dfer_4571
TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; KEGG: chu:CHU_1600 6-phosphofructokinase II; Belongs to the carbohydrate kinase PfkB family.
   
    0.651
Dfer_3040
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: hypothetical protein; K00044 estradiol 17beta-dehydrogenase.
  
    0.564
Dfer_0317
KEGG: sus:Acid_1898 hypothetical protein.
  
     0.549
Dfer_1842
KEGG: bfs:BF4251 hypothetical protein.
  
     0.526
Dfer_4512
PFAM: Carbohydrate binding family 6; SMART: cellulose binding type IV; KEGG: sde:Sde_3003 hypothetical protein.
 
  
 0.498
Dfer_4231
KEGG: ana:all5120 unknown protein.
  
     0.468
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.