STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_3053KEGG: sde:Sde_1681 isoamylase N-terminal domain protein. (102 aa)    
Predicted Functional Partners:
Dfer_0155
KEGG: cya:CYA_0399 malto-oligosyltrehalose synthase; TIGRFAM: malto-oligosyltrehalose synthase; 4-alpha- glucanotransferase; PFAM: glycoside hydrolase family 77; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain.
  
  
 0.840
Dfer_3228
KEGG: amu:Amuc_0235 alpha-glucan phosphorylase; TIGRFAM: alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35.
  
 
 0.756
Dfer_4558
PFAM: Starch synthase catalytic domain protein; KEGG: chu:CHU_3836 glycogen synthase-related protein.
  
  
 0.749
Dfer_0152
KEGG: cpb:Cphamn1_0240 trehalose synthase; TIGRFAM: trehalose synthase; trehalose synthase- fused possible maltokinase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain.
  
  
 0.660
Dfer_0396
KEGG: noc:Noc_1740 glycogen debranching protein GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; Belongs to the glycosyl hydrolase 13 family.
  
  
 0.575
Dfer_0647
KEGG: noc:Noc_1740 glycogen debranching protein GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; Belongs to the glycosyl hydrolase 13 family.
  
  
 0.575
Dfer_1021
Trehalose-phosphatase; KEGG: chu:CHU_0400 glycosyltransferase; TIGRFAM: trehalose-phosphatase; HAD-superfamily hydrolase, subfamily IIB; PFAM: glycosyl transferase family 20; Haloacid dehalogenase domain protein hydrolase type 3; trehalose- phosphatase.
  
 
 0.500
Dfer_3052
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: fjo:Fjoh_0928 TonB-dependent receptor, plug.
       0.478
Dfer_2758
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: bvu:BVU_3991 glycoside hydrolase family alpha- glucosidase.
 
  
 0.455
Dfer_1902
KEGG: rba:RB12630 signal peptide.
  
  
 0.435
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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