STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_3127PFAM: Myo-inositol-1-phosphate synthase; Myo- inositol-1-phosphate synthase GAPDH domain protein; KEGG: tye:THEYE_A1394 hypothetical protein. (406 aa)    
Predicted Functional Partners:
Dfer_4997
PFAM: inositol monophosphatase; KEGG: chu:CHU_3258 inositol-1-monophosphatase.
 
 
 0.936
Dfer_4939
PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: chu:CHU_0998 phosphomannomutase.
    
 0.902
Dfer_3960
PFAM: ROK family protein; KEGG: chu:CHU_1875 glucokinase.
     
  0.900
Dfer_4328
PFAM: ROK family protein; KEGG: bfr:BF1751 transcriptional regulator.
     
  0.900
Dfer_1242
PFAM: protein of unknown function DUF151; KEGG: chu:CHU_1361 hypothetical protein.
  
     0.446
Dfer_3126
KEGG: sus:Acid_1749 putative acetyl xylan esterase.
       0.411
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.