STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_3138KEGG: bfs:BF0440 hypothetical protein. (255 aa)    
Predicted Functional Partners:
Dfer_3137
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: net:Neut_2532 peptidoglycan binding domain- containing protein.
 
  
 0.515
Dfer_2171
PFAM: ErfK/YbiS/YcfS/YnhG family protein; Peptidoglycan-binding domain 1 protein; KEGG: fjo:Fjoh_4967 hypothetical protein.
 
  
 0.506
Dfer_3139
PFAM: Prephenate dehydrogenase; KEGG: gfo:GFO_0342 prephenate dehydrogenase.
       0.483
Dfer_3140
PFAM: aminotransferase class I and II; KEGG: bth:BT_3935 aminotransferase.
       0.442
Dfer_1051
Hypothetical protein; KEGG: chu:CHU_1539 integral outer membrane protein.
  
     0.400
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.