STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_3208TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: chu:CHU_1145 hypothetical protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (357 aa)    
Predicted Functional Partners:
Dfer_3207
PFAM: acriflavin resistance protein; KEGG: fjo:Fjoh_2940 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  0.996
Dfer_5136
PFAM: acriflavin resistance protein; KEGG: fjo:Fjoh_2940 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
   0.858
Dfer_1588
TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; outer membrane efflux protein; KEGG: chu:CHU_1512 cation efflux protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.829
Dfer_0995
TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: fjo:Fjoh_3933 CzcA family heavy metal efflux protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.824
Dfer_5135
PFAM: outer membrane efflux protein; KEGG: fjo:Fjoh_2941 outer membrane efflux protein.
 
  0.803
Dfer_2866
PFAM: outer membrane efflux protein; KEGG: gfo:GFO_0708 outer membrane efflux protein.
  
  0.767
Dfer_1002
PFAM: acriflavin resistance protein; KEGG: pla:Plav_1535 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
   0.744
Dfer_0042
PFAM: outer membrane efflux protein; KEGG: chu:CHU_2515 outer membrane protein.
  
  0.738
Dfer_4164
PFAM: acriflavin resistance protein; KEGG: chu:CHU_2809 cation efflux protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
   0.738
Dfer_1159
PFAM: outer membrane efflux protein; KEGG: fjo:Fjoh_4284 outer membrane protein-like protein.
   
  0.736
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.