STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_3232anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: pdi:BDI_2075 putative anti-sigma factor. (313 aa)    
Predicted Functional Partners:
Dfer_3231
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; KEGG: chu:CHU_0262 RNA polymerase sigma factor (RNA polymerase sigma-24 factor); Belongs to the sigma-70 factor family. ECF subfamily.
 
   0.894
Dfer_0591
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: pdi:BDI_2336 RNA polymerase ECF-type sigma factor.
  
   0.795
Dfer_1746
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: bfs:BF3099 putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   0.792
Dfer_0642
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: pdi:BDI_2336 RNA polymerase ECF-type sigma factor.
  
   0.791
Dfer_2400
Transcriptional regulator, LuxR family; KEGG: bfs:BF0869 putative RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; regulatory protein LuxR; sigma-70 region 4 domain protein; SMART: regulatory protein LuxR.
  
   0.789
Dfer_0685
Transcriptional regulator, LuxR family; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; regulatory protein LuxR; KEGG: chu:CHU_0262 RNA polymerase sigma factor (RNA polymerase sigma-24 factor); Belongs to the sigma-70 factor family. ECF subfamily.
  
   0.777
Dfer_4715
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: fjo:Fjoh_4791 ECF subfamily RNA polymerase sigma-24 factor.
  
   0.776
Dfer_0776
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: chu:CHU_0262 RNA polymerase sigma factor (RNA polymerase sigma-24 factor); Belongs to the sigma-70 factor family. ECF subfamily.
  
   0.775
Dfer_1659
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: pdi:BDI_1305 RNA polymerase ECF-type sigma factor.
  
   0.775
Dfer_1727
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: chu:CHU_0262 RNA polymerase sigma factor (RNA polymerase sigma-24 factor); Belongs to the sigma-70 factor family. ECF subfamily.
  
   0.773
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.