STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_3242PFAM: oxidoreductase molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: pat:Patl_2874 twin-arginine translocation pathway signal. (410 aa)    
Predicted Functional Partners:
Dfer_3243
KEGG: pat:Patl_2873 hypothetical protein.
 
   
 0.932
Dfer_1616
PFAM: cytochrome c class I; KEGG: chu:CHU_0560 sulfite oxidase cytochrome subunit.
 
 
 
 0.845
Dfer_3119
PFAM: beta-lactamase domain protein; Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: fjo:Fjoh_4881 beta-lactamase domain- containing protein.
 
 
  
 0.656
Dfer_5289
PFAM: cytochrome c class I; KEGG: rba:RB9713 large, multifunctional secreted protein.
  
 
 0.554
Dfer_1356
Hypothetical protein.
  
 
 0.546
Dfer_1484
PFAM: PKD domain containing protein; cytochrome c class I; SMART: PKD domain containing protein; KEGG: sgr:SGR_1113 hypothetical protein.
 
 
 
 0.491
Dfer_2188
PFAM: cytochrome c class I; PKD domain containing protein; KEGG: sgr:SGR_924 hypothetical protein.
 
 
 
 0.486
Dfer_2531
KEGG: bfs:BF0761 putative lipoprotein.
   
 
 0.482
Dfer_3245
Hypothetical protein; KEGG: fgenesh1_pg.C_scaffold_22000101.
       0.436
Dfer_3241
KEGG: gfo:GFO_0774 conserved hypothetical protein, secreted.
       0.431
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.