STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_3299PFAM: protein of unknown function DUF820; KEGG: ana:alr4912 hypothetical protein. (193 aa)    
Predicted Functional Partners:
Dfer_3647
PFAM: protein of unknown function DUF820; KEGG: rba:RB8629 hypothetical protein.
  
     0.771
Dfer_4673
PFAM: protein of unknown function DUF820; KEGG: swo:Swol_1528 hypothetical protein.
  
     0.764
Dfer_5110
PFAM: protein of unknown function DUF820; KEGG: aae:aq_1194 hypothetical protein.
  
     0.730
Dfer_4692
KEGG: mar:MAE_28550 hypothetical protein.
  
   
 0.638
queA-2
Queuosine biosynthesis protein; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).
       0.615
Dfer_2468
PFAM: PilT protein domain protein; KEGG: pdi:BDI_3643 putative DNA binding protein.
  
     0.565
Dfer_2985
PFAM: protein of unknown function DUF820; KEGG: ava:Ava_3773 hypothetical protein.
  
     0.546
Dfer_3227
PFAM: protein of unknown function DUF820; KEGG: ava:Ava_3773 hypothetical protein.
  
     0.523
Dfer_3972
PFAM: protein of unknown function DUF820; KEGG: amr:AM1_2016 hypothetical protein.
  
     0.518
Dfer_3301
Hypothetical protein.
       0.510
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.