STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_3337PFAM: transport system permease protein; KEGG: cte:CT0411 iron(III) ABC transporter, permease protein, putative; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (340 aa)    
Predicted Functional Partners:
Dfer_3338
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: paa:Paes_1297 ABC transporter related.
 
 0.998
Dfer_3336
PFAM: periplasmic binding protein; KEGG: ana:alr4031 putative iron transport system substrate-binding protein.
 
 
 0.995
hmuV
ABC transporter related; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system.
 
 0.991
Dfer_5372
PFAM: periplasmic binding protein; KEGG: ana:alr4031 putative iron transport system substrate-binding protein.
 
 
 0.987
Dfer_3535
PFAM: periplasmic binding protein; KEGG: dge:Dgeo_2195 periplasmic binding protein.
 
 0.985
Dfer_3751
PFAM: ABC transporter related; KEGG: gfo:GFO_0474 ABC-type transporter ATP-binding protein.
  
 
 0.936
Dfer_3538
PFAM: Haemin-degrading family protein; KEGG: mxa:MXAN_1318 hemin transport protein HemS.
 
  
 0.654
Dfer_3339
KEGG: cyt:cce_3002 hypothetical protein.
 
     0.628
Dfer_5364
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: paa:Paes_1274 TonB-dependent receptor plug.
 
  
 0.593
Dfer_3340
Hypothetical protein.
       0.543
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.