STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_3345Hypothetical protein; KEGG: aba:Acid345_3469 Hep_Hag. (353 aa)    
Predicted Functional Partners:
Dfer_3346
KEGG: bba:Bd1130 putative YapH protein.
 
 
  
0.735
Dfer_5053
KEGG: aba:Acid345_0352 hypothetical protein.
  
     0.635
Dfer_3344
Hypothetical protein; KEGG: bba:Bd1712 cell wall surface anchor family protein.
 
    
0.621
Dfer_1758
TIGRFAM: lipoprotein; PFAM: protein of unknown function DUF285 lipoprotein; KEGG: swd:Swoo_3150 lipoprotein.
  
 
   0.520
Dfer_0502
TIGRFAM: lipoprotein; PFAM: protein of unknown function DUF285 lipoprotein; KEGG:.
  
 
   0.489
Dfer_5662
KEGG: bay:RBAM_007770 hypothetical protein.
  
 
   0.483
Dfer_1853
TIGRFAM: lipoprotein; PFAM: protein of unknown function DUF285 lipoprotein; KEGG: predicted protein.
  
 
   0.482
Dfer_1867
TIGRFAM: lipoprotein; PFAM: protein of unknown function DUF285 lipoprotein; KEGG: hhe:HH0050 hypothetical protein.
  
 
   0.456
Dfer_1906
TIGRFAM: lipoprotein; PFAM: protein of unknown function DUF285 lipoprotein; KEGG: sru:SRU_p0003 transmembrane protein, putative.
  
 
   0.451
Dfer_5661
KEGG: lsp:Bsph_0411 hypothetical protein.
  
 
   0.444
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.