STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_3402PFAM: Stress responsive alpha-beta barrel domain protein; KEGG: cja:CJA_3530 Tat (twin-arginine translocation) pathway signal sequence domain protein. (99 aa)    
Predicted Functional Partners:
Dfer_3401
Histidine kinase; KEGG: chu:CHU_3041 two-component sensor histidine kinase, phosphate regulation; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein.
       0.675
Dfer_2130
PFAM: protein of unknown function DUF1080; KEGG: smt:Smal_1044 protein of unknown function DUF1080.
  
     0.543
Dfer_5059
PFAM: major facilitator superfamily MFS_1; KEGG: ote:Oter_0723 major facilitator transporter.
  
     0.529
Dfer_3234
PFAM: protein of unknown function DUF1080; KEGG: pdi:BDI_3914 hypothetical protein.
  
     0.528
Dfer_1372
KEGG: sde:Sde_1220 sigma-70 factor.
  
     0.439
Dfer_4713
KEGG: cak:Caul_4605 hypothetical protein.
  
     0.435
Dfer_1033
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: pdi:BDI_1641 hypothetical protein; Belongs to the hyi family.
  
     0.401
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.