STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_3417KEGG: sus:Acid_4412 hypothetical protein. (399 aa)    
Predicted Functional Partners:
Dfer_3418
PFAM: SMC domain protein; KEGG: tte:TTE0266 ATPase involved in DNA repair.
       0.623
Dfer_3413
PFAM: Methyltransferase type 12; Methyltransferase type 11; KEGG: gur:Gura_4275 methyltransferase type 11.
       0.420
Dfer_3414
PFAM: glycosyl transferase family 2; KEGG: dol:Dole_1293 ribonuclease III.
       0.420
Dfer_3415
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: xca:xccb100_2588 NDP-hexose aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
       0.420
Dfer_3416
PFAM: WxcM domain protein; KEGG: rec:RHECIAT_CH0000829 hypothetical protein.
       0.420
Dfer_3419
PFAM: GH3 auxin-responsive promoter; KEGG: chu:CHU_3670 auxin-regulated protein.
       0.418
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.