STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_3545KEGG: gfo:GFO_0521 hypothetical protein. (202 aa)    
Predicted Functional Partners:
Dfer_3546
KEGG: fjo:Fjoh_2750 hypothetical protein.
 
     0.952
Dfer_3544
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: gfo:GFO_0520 RNA polymerase ECF-type sigma factor.
 
     0.671
Dfer_4376
Hypothetical protein.
  
     0.654
Dfer_3805
SMART: Tetratricopeptide domain protein; KEGG: chu:CHU_3505 hypothetical protein.
  
     0.599
Dfer_5763
PFAM: Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: vfi:VF_2326 N-acetylmuramoyl-L-alanine amidase II.
  
     0.527
Dfer_5686
Hypothetical protein; KEGG: bvu:BVU_1978 putative disulphide-isomerase.
  
     0.525
Dfer_5768
TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF1550; KEGG: chu:CHU_1794 hypothetical protein.
  
     0.495
Dfer_4130
KEGG: gfo:GFO_2725 secreted protein.
  
     0.477
Dfer_2378
KEGG: pgi:PG1492 hypothetical protein.
  
     0.474
Dfer_2587
KEGG: chu:CHU_1084 hypothetical protein.
  
     0.463
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.