STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_3557PFAM: Rhomboid family protein; KEGG: chu:CHU_0460 rhomboid-like protein. (206 aa)    
Predicted Functional Partners:
Dfer_3558
PFAM: Polyprenyl synthetase; KEGG: chu:CHU_0461 geranyltranstransferase (farnesyl-diphosphate synthase); Belongs to the FPP/GGPP synthase family.
     
 0.738
Dfer_3810
PFAM: Rhomboid family protein; KEGG: chu:CHU_0015 rhomboid family membrane protein.
  
     0.668
Dfer_3892
PFAM: CBS domain containing protein; KEGG: chu:CHU_3407 hypothetical protein.
  
     0.624
Dfer_3809
PFAM: Rhomboid family protein; KEGG: chu:CHU_0016 hypothetical protein.
  
     0.585
tatA
Twin-arginine translocation protein, TatA/E family subunit; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
   
 
 0.579
tatA-2
Twin-arginine translocation protein, TatA/E family subunit; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
   
 
 0.579
Dfer_3731
TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: chu:CHU_0687 5-formyltetrahydrofolate cyclo- ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
  
    0.564
Dfer_3635
KEGG: chu:CHU_0750 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin.
  
   0.539
Dfer_3645
PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin; KEGG: gvi:gll0522 N-acetylmuramoyl-L-alanine amidase.
  
   0.539
Dfer_3004
PFAM: band 7 protein; SMART: band 7 protein; KEGG: afw:Anae109_0935 band 7 protein.
   
 0.516
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.