STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_3570KEGG: fjo:Fjoh_2179 hypothetical protein. (310 aa)    
Predicted Functional Partners:
Dfer_3569
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: fps:FP0690 outer membrane protein precursor.
 
     0.904
Dfer_3688
KEGG: chu:CHU_2462 hypothetical protein.
  
     0.692
Dfer_5768
TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF1550; KEGG: chu:CHU_1794 hypothetical protein.
  
     0.612
Dfer_5751
Hypothetical protein; KEGG: gfo:GFO_1837 conserved hypothetical protein, secreted.
  
     0.578
Dfer_4246
KEGG: chu:CHU_3237 hypothetical protein.
  
     0.552
Dfer_3739
KEGG: chu:CHU_3275 hypothetical protein.
  
     0.545
Dfer_3571
PFAM: peptidase S58 DmpA; KEGG: aba:Acid345_0995 Aminopeptidase DmpA. Serine peptidase. MEROPS family S58.
       0.538
Dfer_3958
PFAM: Fibronectin type III domain protein; KEGG: cts:Ctha_1991 fibronectin type III domain protein.
  
     0.520
Dfer_3762
SMART: Tetratricopeptide domain protein; KEGG: chu:CHU_2830 TPR repeat-containing protein.
  
     0.518
Dfer_3617
KEGG: rce:RC1_2907 hypothetical protein.
  
     0.510
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.