STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_3577KEGG: hypothetical protein. (155 aa)    
Predicted Functional Partners:
Dfer_3576
PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: bfs:BF2023 putative ATP-dependent protease; Belongs to the ClpA/ClpB family.
       0.634
Dfer_3578
KEGG: hch:HCH_03987 hypothetical protein.
       0.631
Dfer_3574
KEGG: fjo:Fjoh_3269 hypothetical protein.
       0.541
Dfer_3575
Hypothetical protein; KEGG: rru:Rru_A2864 signal transduction protein.
       0.541
Dfer_3579
PFAM: Fibronectin type III domain protein; KEGG: fjo:Fjoh_0912 fibronectin, type III domain- containing protein.
       0.520
Dfer_3580
Hypothetical protein.
       0.431
Dfer_3581
Hypothetical protein.
       0.431
Dfer_3582
PFAM: OmpA/MotB domain protein; KEGG: cti:RALTA_B1027 putative outer membrane protein; OmpA/MotB domain.
       0.431
Dfer_3583
Hypothetical protein.
       0.431
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.