STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_3589TIGRFAM: Rhs element Vgr protein; PFAM: Rhs element Vgr protein; KEGG: chu:CHU_0660 hypothetical protein. (612 aa)    
Predicted Functional Partners:
Dfer_3584
PFAM: PAAR repeat-containing protein; KEGG: fjo:Fjoh_3156 PaaR repeat-containing protein.
 
   
 0.844
Dfer_3585
KEGG: fjo:Fjoh_3267 hypothetical protein.
  
  
 0.840
Dfer_3587
Hypothetical protein.
       0.773
Dfer_3588
KEGG: fjo:Fjoh_3261 hypothetical protein.
       0.773
Dfer_3594
KEGG: fjo:Fjoh_3278 hypothetical protein.
  
  
 0.750
Dfer_0668
PFAM: GPW/gp25 family protein; KEGG: gbm:Gbem_2552 gpW/GP25 family protein.
 
  
 0.733
Dfer_0673
TIGRFAM: conserved hypothetical protein; KEGG: fjo:Fjoh_3151 phage tail protein.
 
  
 0.722
Dfer_0672
TIGRFAM: conserved hypothetical protein; KEGG: cpc:Cpar_0899 conserved hypothetical phage tail protein.
 
  
 0.718
Dfer_0674
KEGG: cpc:Cpar_0901 putative phage tail sheath protein FI.
 
   
 0.712
Dfer_3576
PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: bfs:BF2023 putative ATP-dependent protease; Belongs to the ClpA/ClpB family.
 
  
 0.699
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.