STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_3608KEGG: chu:CHU_0650 hypothetical protein. (50 aa)    
Predicted Functional Partners:
rpmG
TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; KEGG: fjo:Fjoh_4982 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
   
 
 0.868
rpmB
TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: aas:Aasi_0570 hypothetical protein; Belongs to the bacterial ribosomal protein bL28 family.
   
 
 0.707
rpmC
TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; KEGG: chu:CHU_3154 50S ribosomal protein L29P; Belongs to the universal ribosomal protein uL29 family.
  
 
   0.703
rplY
Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
  
 
   0.696
Dfer_2916
KEGG: chu:CHU_0172 gliding motility-related protein.
  
     0.690
Dfer_2917
KEGG: chu:CHU_0173 gliding motility-related protein.
  
     0.684
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
    
   0.652
rpsO
Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
    
   0.652
rpmI
TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; KEGG: bfs:BF1696 50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.
    
   0.652
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
    
   0.652
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.