STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_3721Transcriptional repressor, CopY family; PFAM: Penicillinase repressor; KEGG: cps:CPS_4382 putative transcriptional regulator. (124 aa)    
Predicted Functional Partners:
Dfer_3722
PFAM: peptidase M56 BlaR1; peptidase M48 Ste24p; KEGG: aba:Acid345_0209 peptidase M56, BlaR1.
 
  
 0.962
Dfer_0288
PFAM: peptidase M56 BlaR1; KEGG: sus:Acid_0899 peptidase M56, BlaR1.
 
  
 0.837
Dfer_1287
Transcriptional repressor, CopY family; PFAM: Penicillinase repressor; KEGG: bth:BT_3899 transcriptional regulator.
  
     0.680
Dfer_1288
PFAM: peptidase M56 BlaR1; KEGG: pdi:BDI_3215 TonB.
 
  
 0.555
Dfer_4940
PFAM: peptidase M56 BlaR1; KEGG: bfs:BF0821 hypothetical protein.
 
  
 0.494
Dfer_0781
TIGRFAM: TonB family protein; PFAM: peptidase M56 BlaR1; Gram-negative tonB protein; KEGG: bvu:BVU_0113 hypothetical protein.
 
  
 0.474
Dfer_3720
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
       0.451
Dfer_0988
PFAM: DNA mismatch repair protein MutS domain protein; SMART: DNA mismatch repair protein MutS domain protein; KEGG: drm:Dred_0359 DNA mismatch repair protein MutS domain-containing protein.
  
     0.438
Dfer_3381
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: bth:BT_0813 TonB.
 
  
 0.432
Dfer_4132
PFAM: DNA mismatch repair protein MutS domain protein; SMART: DNA mismatch repair protein MutS domain protein; KEGG: dsy:DSY2437 hypothetical protein.
  
     0.408
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.