STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_3833PFAM: GH3 auxin-responsive promoter; KEGG: chu:CHU_2997 auxin-regulated protein. (500 aa)    
Predicted Functional Partners:
Dfer_3893
PFAM: alpha/beta hydrolase fold; KEGG: chu:CHU_3406 alpha/beta fold family hydrolase.
  
   
 0.760
Dfer_0440
PFAM: acyl-CoA reductase; KEGG: chu:CHU_2227 hypothetical protein.
 
 
 
 0.754
dxr
1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.
       0.746
Dfer_3835
KEGG: chu:CHU_0508 hypothetical protein.
       0.714
Dfer_3848
KEGG: chu:CHU_0100 hypothetical protein.
  
     0.635
Dfer_2421
KEGG: chu:CHU_1997 hypothetical protein.
  
     0.618
Dfer_4253
KEGG: chu:CHU_1553 hypothetical protein.
  
     0.616
Dfer_3789
KEGG: chu:CHU_3496 hypothetical protein.
  
     0.597
rpmF
TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: gfo:GFO_3341 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
  
     0.562
Dfer_5213
KEGG: chu:CHU_3016 hypothetical protein.
 
     0.541
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.