STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_3848KEGG: chu:CHU_0100 hypothetical protein. (177 aa)    
Predicted Functional Partners:
Dfer_3789
KEGG: chu:CHU_3496 hypothetical protein.
  
     0.772
Dfer_0458
KEGG: chu:CHU_0945 motility-like protein.
  
     0.771
Dfer_3547
KEGG: fjo:Fjoh_4974 hypothetical protein.
  
     0.771
Dfer_4015
KEGG: chu:CHU_0124 hypothetical protein.
  
     0.763
Dfer_0440
PFAM: acyl-CoA reductase; KEGG: chu:CHU_2227 hypothetical protein.
  
     0.754
rpmF
TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: gfo:GFO_3341 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
  
     0.748
bshC
KEGG: fjo:Fjoh_4974 hypothetical protein; Belongs to the BshC family.
  
     0.727
Dfer_2904
PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: chu:CHU_1046 hypothetical protein.
  
     0.669
Dfer_0084
PFAM: LmbE family protein; KEGG: chu:CHU_1776 hypothetical protein.
  
     0.667
Dfer_3833
PFAM: GH3 auxin-responsive promoter; KEGG: chu:CHU_2997 auxin-regulated protein.
  
     0.635
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.