STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cysSKEGG: chu:CHU_3418 cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia; tRNA synthetase class I (M); Cysteinyl-tRNA synthetase class Ia DALR; Belongs to the class-I aminoacyl-tRNA synthetase family. (500 aa)    
Predicted Functional Partners:
Dfer_2038
Serine O-acetyltransferase; PFAM: transferase hexapeptide repeat containing protein; KEGG: chu:CHU_1816 serine acetyltransferase.
 
  
 0.953
Dfer_3252
TIGRFAM: cysteine synthase; cysteine synthase B; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: chu:CHU_0684 cysteine synthase B; Belongs to the cysteine synthase/cystathionine beta- synthase family.
  
 
 0.930
Dfer_0243
Serine O-acetyltransferase; PFAM: transferase hexapeptide repeat containing protein; KEGG: chu:CHU_0685 serine O-acetyltransferase.
 
  
 0.898
Dfer_3904
PFAM: peptidase M28; KEGG: bvu:BVU_1317 leucine aminopeptidase precursor.
       0.801
Dfer_3905
PFAM: protein of unknown function DUF192; KEGG: gfo:GFO_2744 secreted protein containing DUF192.
       0.796
argS
KEGG: chu:CHU_1577 arginyl-tRNA synthetase; TIGRFAM: arginyl-tRNA synthetase.
 
 
 0.783
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
  
 0.780
thrS
threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr).
 
  
 0.777
Dfer_0057
PFAM: transferase hexapeptide repeat containing protein; KEGG: bfs:BF2803 putative acetyltransferase.
  
  
 0.775
Dfer_4155
Acetyltransferase; KEGG: chu:CHU_2692 acetyltransferase.
  
  
 0.775
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.