STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_3997PFAM: YdjC family protein; KEGG: rrs:RoseRS_0422 YdjC family protein. (331 aa)    
Predicted Functional Partners:
Dfer_4454
Hypothetical protein; KEGG: cya:CYA_0280 thrombospondin N-terminal-like domain-containing protein.
  
     0.546
Dfer_3998
KEGG: fjo:Fjoh_1488 hypothetical protein.
       0.545
Dfer_4310
KEGG: hypothetical protein.
 
     0.492
Dfer_4135
KEGG: fnu:FN1449 hypothetical protein.
  
     0.489
Dfer_3218
KEGG: rrs:RoseRS_4114 hypothetical protein.
 
     0.487
Dfer_3283
PFAM: RagB/SusD domain protein; KEGG: pdi:BDI_3583 hypothetical protein.
  
     0.479
Dfer_5260
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: pdi:BDI_1517 hypothetical protein.
  
     0.430
Dfer_4456
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: pdi:BDI_3062 hypothetical protein.
  
     0.425
Dfer_4455
PFAM: RagB/SusD domain protein; KEGG: bfs:BF0340 hypothetical protein.
  
     0.423
Dfer_5259
PFAM: RagB/SusD domain protein; KEGG: pdi:BDI_2333 hypothetical protein.
  
     0.410
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.