STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_4010KEGG: fjo:Fjoh_1342 hypothetical protein. (832 aa)    
Predicted Functional Partners:
Dfer_4231
KEGG: ana:all5120 unknown protein.
  
     0.736
Dfer_4512
PFAM: Carbohydrate binding family 6; SMART: cellulose binding type IV; KEGG: sde:Sde_3003 hypothetical protein.
  
     0.674
Dfer_3043
KEGG: rsq:Rsph17025_1334 beta-mannanase-like protein; Belongs to the glycosyl hydrolase 26 family.
  
     0.610
Dfer_3620
KEGG: chu:CHU_3409 hypothetical protein.
  
     0.572
Dfer_4648
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: lbf:LBF_3315 TonB-dependant outer membrane receptor.
  
     0.567
Dfer_5597
PFAM: Diverse 7TM receptor transmembrane region; Diverse 7TM receptor extracellular region 2; KEGG: chu:CHU_1654 chromosome segregation ATPase; intracellular signalling protein.
  
     0.561
Dfer_3934
PFAM: protein of unknown function DUF541; KEGG: chu:CHU_3582 hypothetical protein.
  
     0.536
Dfer_4647
Hypothetical protein.
  
     0.532
Dfer_0317
KEGG: sus:Acid_1898 hypothetical protein.
  
     0.529
Dfer_1571
KEGG: fjo:Fjoh_4949 hypothetical protein.
  
     0.521
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.