STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_4017KEGG: chu:CHU_0122 oxidoreductase, Fe-S subunit. (447 aa)    
Predicted Functional Partners:
Dfer_4016
PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: chu:CHU_0123 Fe-S oxidoreductase, dehydrogenase subunit.
   
 0.995
Dfer_4015
KEGG: chu:CHU_0124 hypothetical protein.
 
   
 0.799
Dfer_1240
PFAM: Electron transfer flavoprotein alpha/beta- subunit; KEGG: chu:CHU_1359 electron transfer flavoprotein, beta subunit.
 
  
 0.761
Dfer_5745
PFAM: protein of unknown function DUF162; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: fjo:Fjoh_4211 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
  
 
 0.760
Dfer_3476
KEGG: chu:CHU_2212 molybdopterin oxidoreductase, iron-sulfur binding subunit.
 
  
 0.706
Dfer_5746
PFAM: protein of unknown function DUF162; KEGG: fjo:Fjoh_4210 hypothetical protein.
  
 
 0.700
Dfer_1241
PFAM: Electron transfer flavoprotein alpha subunit; Electron transfer flavoprotein alpha/beta-subunit; KEGG: chu:CHU_1360 electron transfer flavoprotein, alpha subunit.
 
  
 0.666
Dfer_3526
PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: chu:CHU_3591 4-enzyme protein: 3-hydroxyacyl- CoA dehydrogenase; 3-hydroxybutyryl-CoA epimerase; delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase; enoyl-CoA hydratase.
 
  
 0.621
Dfer_3477
PFAM: cytochrome c class I; KEGG: chu:CHU_2213 cytochrome c, mono- and diheme variant.
  
    0.563
Dfer_3475
PFAM: Polysulphide reductase NrfD; KEGG: chu:CHU_2211 molybdopterin oxidoreductase.
 
   
 0.547
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.