STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_4035PFAM: glycosyl transferase group 1; KEGG: cts:Ctha_2148 glycosyl transferase group 1. (421 aa)    
Predicted Functional Partners:
Dfer_4033
PFAM: oxidoreductase domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: sat:SYN_02682 oxidoreductase.
 
  
 0.915
Dfer_4034
PFAM: Heparinase II/III family protein; KEGG: bfs:BF0747 hypothetical protein.
 
     0.908
Dfer_3631
PFAM: sugar transferase; KEGG: bfr:BF0817 putative undecaprenyl-phosphate glycosyl-1-phosphate transferase.
  
 0.885
Dfer_3949
PFAM: glycosyl transferase group 1; KEGG: pna:Pnap_3120 glycosyl transferase, group 1.
 
     0.842
Dfer_4791
KEGG: cts:Ctha_0793 UDP-N-acetylglucosamine 2- epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
 
  
 0.756
Dfer_4036
KEGG: fjo:Fjoh_0571 hypothetical protein.
       0.613
Dfer_0046
TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: fjo:Fjoh_4994 undecaprenyl-phosphate galactose phosphotransferase.
  
 0.502
Dfer_3895
PFAM: polysaccharide biosynthesis protein CapD; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; NAD-dependent epimerase/dehydratase; KEGG: pdi:BDI_0423 putative nucleoside-diphosphate sugar epimerase/dehydrase.
 
  
 0.493
Dfer_4037
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: chu:CHU_2619 NADH:ubiquinone oxidoreductase chain I.
       0.472
Dfer_4038
NADH-ubiquinone/plastoquinone oxidoreductase chain 6; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
       0.472
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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