STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_4041KEGG: pat:Patl_2615 hypothetical protein. (165 aa)    
Predicted Functional Partners:
Dfer_4205
Hypothetical protein; KEGG: chu:CHU_2379 xylanase, CBM9 module, glycoside hydrolase family 11 protein.
  
     0.718
Dfer_3665
KEGG: gfo:GFO_3249 hypothetical protein.
  
     0.714
Dfer_2774
KEGG: sus:Acid_4389 hypothetical protein.
  
     0.704
Dfer_4681
KEGG: stt:t2304 hypothetical protein.
  
     0.647
Dfer_2640
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: aba:Acid345_1695 sugar phosphate isomerases/epimerases.
  
     0.645
Dfer_4042
KEGG: bfr:BF0135 hypothetical protein.
       0.636
Dfer_0497
KEGG: amr:AM1_E0026 hypothetical protein.
  
     0.614
Dfer_1848
KEGG: rba:RB9557 hypothetical protein.
  
     0.607
Dfer_4090
PFAM: protein of unknown function DUF303 acetylesterase putative; KEGG: chu:CHU_2528 hypothetical protein.
  
     0.583
Dfer_3689
PFAM: PKD domain containing protein; SMART: PKD domain containing protein; KEGG: fps:FP2310 hypothetical protein.
  
     0.575
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.