STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_4089PFAM: protein of unknown function DUF303 acetylesterase putative; KEGG: chu:CHU_1051 endoglucanase-related protein. (720 aa)    
Predicted Functional Partners:
Dfer_2774
KEGG: sus:Acid_4389 hypothetical protein.
  
     0.773
Dfer_5106
Membrane protein-like protein; KEGG: dth:DICTH_0563 hypothetical protein.
  
     0.772
Dfer_1030
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: chu:CHU_1681 hypothetical protein.
 
     0.768
Dfer_3958
PFAM: Fibronectin type III domain protein; KEGG: cts:Ctha_1991 fibronectin type III domain protein.
  
     0.767
Dfer_2770
Hypothetical protein; KEGG: fjo:Fjoh_0352 lipopolysaccharide biosynthesis protein.
  
     0.761
Dfer_5763
PFAM: Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: vfi:VF_2326 N-acetylmuramoyl-L-alanine amidase II.
  
     0.748
Dfer_3689
PFAM: PKD domain containing protein; SMART: PKD domain containing protein; KEGG: fps:FP2310 hypothetical protein.
  
     0.741
Dfer_2778
KEGG: ter:Tery_0122 glycosyl transferase, group 1.
  
    0.734
Dfer_0218
KEGG: bfs:BF1643 hypothetical protein.
  
     0.730
Dfer_2477
Hypothetical protein; KEGG: chu:CHU_2149 glycoside hydrolase family 5 protein.
  
     0.729
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.