STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_4100PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bth:BT_2094 TonB-dependent receptor. (630 aa)    
Predicted Functional Partners:
Dfer_4099
KEGG: fjo:Fjoh_0092 hypothetical protein.
 
    0.956
Dfer_4101
Hypothetical protein.
       0.671
Dfer_2950
Hypothetical protein; KEGG: cts:Ctha_1926 tetratricopeptide domain protein.
  
     0.595
Dfer_2477
Hypothetical protein; KEGG: chu:CHU_2149 glycoside hydrolase family 5 protein.
  
     0.594
Dfer_2484
Hypothetical protein; KEGG: bcm:Bcenmc03_4333 heat shock protein DnaJ domain-containing protein.
  
     0.557
Dfer_3658
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: bth:BT_3673 TonB.
  
 
   0.516
Dfer_0218
KEGG: bfs:BF1643 hypothetical protein.
  
     0.515
Dfer_4102
PFAM: protein of unknown function DUF6 transmembrane; KEGG: abu:Abu_1844 hypothetical protein.
       0.495
Dfer_3440
KEGG: chu:CHU_2850 hypothetical protein.
  
     0.463
Dfer_0866
PFAM: transposase IS3/IS911 family protein; KEGG: azc:AZC_3852 transposase.
  
     0.433
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.