STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_4127KEGG: cth:Cthe_2202 hypothetical protein. (239 aa)    
Predicted Functional Partners:
Dfer_1790
PFAM: RagB/SusD domain protein; KEGG: pdi:BDI_2468 hypothetical protein.
  
     0.464
Dfer_4699
KEGG: rba:RB1854 hypothetical protein.
  
     0.463
Dfer_4126
PFAM: KDPG and KHG aldolase; KEGG: bfr:BF2699 keto-hydroxyglutarate- aldolase/keto-deoxy- phosphogluconate aldolase.
       0.461
Dfer_1389
PFAM: RagB/SusD domain protein; KEGG: bvu:BVU_1782 hypothetical protein.
  
     0.447
Dfer_3216
PFAM: metallophosphoesterase; KEGG: swo:Swol_1992 hypothetical protein.
  
     0.435
Dfer_4125
PFAM: PfkB domain protein; KEGG: pdi:BDI_3186 putative gluconate kinase.
       0.426
Dfer_4183
PFAM: RagB/SusD domain protein; KEGG: bvu:BVU_1782 hypothetical protein.
  
     0.407
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.