STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_4232PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: ppd:Ppro_2951 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding. (315 aa)    
Predicted Functional Partners:
Dfer_5030
KEGG: tex:Teth514_1896 glycerate kinase; TIGRFAM: glycerate kinase; PFAM: glycerate kinase; Belongs to the glycerate kinase type-1 family.
 
  
 0.942
Dfer_1409
2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: dge:Dgeo_2614 2-hydroxy-3-oxopropionate reductase.
 
  
 0.936
Dfer_1032
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: pdi:BDI_1641 hypothetical protein.
   
 
 0.906
Dfer_1033
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: pdi:BDI_1641 hypothetical protein; Belongs to the hyi family.
   
 
 0.906
Dfer_3054
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bmj:BMULJ_01848 hydroxypyruvate isomerase; Belongs to the hyi family.
   
 
 0.906
Dfer_1016
TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; KEGG: dth:DICTH_0483 2-keto-3-deoxygluconate-6- phosphate aldolase.
    
  0.905
Dfer_4126
PFAM: KDPG and KHG aldolase; KEGG: bfr:BF2699 keto-hydroxyglutarate- aldolase/keto-deoxy- phosphogluconate aldolase.
    
  0.905
Dfer_4743
PFAM: FAD dependent oxidoreductase; KEGG: cak:Caul_4744 FAD dependent oxidoreductase.
     
 0.806
Dfer_0456
TIGRFAM: competence/damage-inducible protein CinA; PFAM: CinA domain protein; molybdopterin binding domain; KEGG: chu:CHU_2526 competence/damage-inducible protein CinA; Belongs to the CinA family.
  
    0.690
Dfer_3378
KEGG: chu:CHU_1400 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; Belongs to the pyruvate kinase family.
 
 
 0.518
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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