STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_4250PFAM: protein of unknown function DUF1080; KEGG: gfo:GFO_1721 secreted protein containing DUF1080. (287 aa)    
Predicted Functional Partners:
Dfer_4384
PFAM: protein of unknown function DUF1080; KEGG: pdi:BDI_2462 hypothetical protein.
  
     0.650
Dfer_0469
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rba:RB12844 hypothetical protein.
  
     0.580
Dfer_0589
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rba:RB12844 hypothetical protein.
  
     0.565
Dfer_1206
PFAM: protein of unknown function DUF1080; KEGG: pdi:BDI_1270 hypothetical protein.
  
     0.534
Dfer_3054
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bmj:BMULJ_01848 hydroxypyruvate isomerase; Belongs to the hyi family.
  
     0.524
Dfer_4249
Deoxyribodipyrimidine photo-lyase; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: bba:Bd2206 deoxyribodipyrimidine photolyase- class I.
       0.506
Dfer_3234
PFAM: protein of unknown function DUF1080; KEGG: pdi:BDI_3914 hypothetical protein.
 
     0.495
Dfer_4066
PFAM: oxidoreductase domain protein; KEGG: rba:RB3442 dehydrogenase.
  
     0.486
Dfer_3499
PFAM: protein of unknown function DUF1080; KEGG: rba:RB10138 putative membrane lipoprotein.
  
     0.485
Dfer_2188
PFAM: cytochrome c class I; PKD domain containing protein; KEGG: sgr:SGR_924 hypothetical protein.
 
     0.483
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.