STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_4286PFAM: RagB/SusD domain protein; KEGG: bfs:BF0289 putative lipoprotein. (630 aa)    
Predicted Functional Partners:
Dfer_4287
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bfr:BF0340 hypothetical protein.
 
 
   0.949
Dfer_4285
KEGG: bfr:BF0342 hypothetical protein.
 
     0.946
Dfer_4284
PFAM: glycoside hydrolase family 43; KEGG: ote:Oter_1390 arabinan endo-1,5-alpha-L- arabinosidase.
 
     0.806
Dfer_4695
PFAM: TonB-dependent receptor plug; Secretin/TonB short domain; KEGG: bfs:BF0288 putative TonB dependent receptor outer membrane protein.
  
 
   0.787
Dfer_4697
KEGG: bfs:BF0290 hypothetical protein.
  
     0.775
Dfer_0300
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bvu:BVU_1152 hypothetical protein.
  
 
   0.693
Dfer_2597
PFAM: glycoside hydrolase family 76; KEGG: bfs:BF0279 putative glycosylhydrolase.
  
     0.675
Dfer_4736
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bvu:BVU_1152 hypothetical protein.
  
 
   0.675
Dfer_1232
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: pdi:BDI_3797 hypothetical protein.
  
     0.662
Dfer_1850
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bth:BT_2461 hypothetical protein.
  
 
   0.613
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.