STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_4458KEGG: nmu:Nmul_A0462 hypothetical protein. (458 aa)    
Predicted Functional Partners:
Dfer_4457
Transcriptional regulator, LuxR family; PFAM: Two component regulator three Y domain protein; regulatory protein LuxR; Two component regulator propeller; SMART: regulatory protein LuxR; KEGG: fjo:Fjoh_2430 putative periplasmic ligand- binding sensor protein.
       0.550
Dfer_3708
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sus:Acid_2595 xylose isomerase domain- containing protein.
  
     0.446
Dfer_4205
Hypothetical protein; KEGG: chu:CHU_2379 xylanase, CBM9 module, glycoside hydrolase family 11 protein.
  
     0.438
Dfer_0097
KEGG: fps:FP0578 hypothetical protein.
  
     0.424
Dfer_2875
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: chu:CHU_3033 serine protease.
  
    0.419
Dfer_0684
KEGG: fjo:Fjoh_3332 ABC-type transport system involved in multi-copper enzyme maturation permease component-like protein.
  
     0.415
Dfer_0985
KEGG: pdi:BDI_2527 hypothetical protein.
  
     0.413
Dfer_3387
KEGG: fps:FP0578 hypothetical protein.
  
     0.406
Dfer_2764
KEGG: bth:BT_2437 hypothetical protein.
  
     0.404
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.