STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_4467TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase; KEGG: chu:CHU_1793 dihydroorotase. (427 aa)    
Predicted Functional Partners:
pyrB
TIGRFAM: aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; KEGG: chu:CHU_0084 aspartate carbamoyltransferase, catalytic subunit; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
 0.999
Dfer_2476
TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; protein of unknown function DUF201; phosphoribosylglycinamide synthetase; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl- phosphate synthetase large chain domain protein; KEGG: chu:CHU_3278 carbamoyl-phosphate synthase large subunit.
 
 0.993
carA
TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I; Carbamoyl- phosphate synthase small chain; KEGG: chu:CHU_3134 carbamoyl phosphate synthase small subunit; Belongs to the CarA family.
  
 0.991
pyrD
Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
 
 0.985
Dfer_2676
PFAM: phosphoribosyltransferase; KEGG: chu:CHU_0083 uracil phosphoribosyltransferase; pyrimidine operon attenuation protein.
 
 
 0.956
Dfer_4675
PFAM: phosphoribosyltransferase; KEGG: chu:CHU_0488 uracil phosphoribosyltransferase/pyrimidine operon attenuation protein.
 
 
 0.947
Dfer_3692
Allantoinase; PFAM: amidohydrolase; KEGG: chu:CHU_1007 dihydroorotase.
  
  
 
0.927
Dfer_2441
PFAM: amidohydrolase; KEGG: sus:Acid_6154 dihydroorotase.
     
  0.900
Dfer_2453
PFAM: amidohydrolase; KEGG: sus:Acid_6154 dihydroorotase.
     
  0.900
Dfer_3349
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: sus:Acid_6154 dihydroorotase.
     
  0.900
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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