STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_4491KEGG: aau:AAur_2666 hypothetical protein. (455 aa)    
Predicted Functional Partners:
Dfer_4493
PFAM: oxidoreductase domain protein; KEGG: bth:BT_3586 putative dehydrogenase.
 
    0.921
Dfer_5601
Glucan endo-1,6-beta-glucosidase; PFAM: glycoside hydrolase family 30; KEGG: rfr:Rfer_1106 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 30 family.
     
  0.900
Dfer_4492
Glutamine--scyllo-inositol transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rrs:RoseRS_3954 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
     0.870
Dfer_4487
TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: bth:BT_3588 N-acetylglucosamine-6-phosphate deacetylase.
 
 
 0.827
Dfer_4490
Hypothetical protein.
       0.776
Dfer_1374
PFAM: lipolytic protein G-D-S-L family; KEGG: rba:RB7973 cytochrome c precursor.
  
     0.751
Dfer_3262
KEGG: art:Arth_3330 hypothetical protein.
  
     0.745
Dfer_1373
TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; KEGG: rba:RB6964 L-sorbosone dehydrogenase.
 
     0.721
Dfer_3778
KEGG: ote:Oter_2210 hypothetical protein.
  
     0.710
Dfer_4488
TIGRFAM: glucose/galactose transporter; PFAM: major facilitator superfamily MFS_1; KEGG: bth:BT_3589 glucose/galactose transporter.
     
 0.706
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.