STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_4493PFAM: oxidoreductase domain protein; KEGG: bth:BT_3586 putative dehydrogenase. (363 aa)    
Predicted Functional Partners:
Dfer_4491
KEGG: aau:AAur_2666 hypothetical protein.
 
    0.921
Dfer_4492
Glutamine--scyllo-inositol transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rrs:RoseRS_3954 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
    0.787
Dfer_4489
PFAM: oxidoreductase domain protein; KEGG: bth:BT_3581 putative dehydrogenase and relate proteins.
 
     0.759
Dfer_1887
KEGG: rba:RB7871 signal peptide.
 
    0.739
Dfer_4488
TIGRFAM: glucose/galactose transporter; PFAM: major facilitator superfamily MFS_1; KEGG: bth:BT_3589 glucose/galactose transporter.
 
    0.698
Dfer_4473
KEGG: atc:AGR_L_1216 hypothetical protein.
  
    0.695
Dfer_1271
KEGG: rba:RB7999 hypothetical protein.
 
     0.690
Dfer_1374
PFAM: lipolytic protein G-D-S-L family; KEGG: rba:RB7973 cytochrome c precursor.
  
     0.679
Dfer_4487
TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: bth:BT_3588 N-acetylglucosamine-6-phosphate deacetylase.
 
     0.676
Dfer_4490
Hypothetical protein.
       0.668
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.