STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_4499PFAM: plasmid maintenance system killer; KEGG: btr:Btr_0421 hypothetical protein. (111 aa)    
Predicted Functional Partners:
Dfer_4500
KEGG: dol:Dole_2889 XRE family plasmid maintenance system antidote protein; TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
 
 
 
 0.968
Dfer_1123
Plasmid maintenance system antidote protein, XRE family; KEGG: dno:DNO_0271 virulence-associated protein VapA2; TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
 
 
 
 0.870
Dfer_2505
KEGG: rru:Rru_A2430 plasmid maintenance system antidote protein; TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
 
 
 
 0.859
Dfer_4918
Plasmid maintenance system antidote protein, XRE family; KEGG: chu:CHU_0642 hypothetical protein; TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
 
 
 
 0.809
Dfer_4498
PFAM: sulfatase; KEGG: pdi:BDI_1675 arylsulfatase A.
       0.701
Dfer_0091
KEGG: pdi:BDI_0906 putative plasmid maintenance system antidote protein.
   
 
 0.458
Dfer_0126
KEGG: pna:Pnap_4963 hypothetical protein.
   
 
 0.458
Dfer_0132
Hypothetical protein.
   
 
 0.458
Dfer_0351
Plasmid maintenance system antidote protein, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: cph:Cpha266_0938 helix-turn-helix domain- containing protein.
   
 
 0.458
Dfer_4754
KEGG: chu:CHU_3507 hypothetical protein.
   
 
 0.458
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.