STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_4531PFAM: FG-GAP repeat protein; KEGG: dol:Dole_1941 hypothetical protein. (788 aa)    
Predicted Functional Partners:
Dfer_5750
PFAM: surface antigen (D15); KEGG: chu:CHU_3233 WD-40-like repeat-containing protein.
  
    0.737
Dfer_2924
KEGG: chu:CHU_0922 hypothetical protein.
  
     0.712
Dfer_3079
KEGG: fps:FP2017 hypothetical protein.
  
     0.707
Dfer_2823
KEGG: chu:CHU_1601 hypothetical protein.
  
     0.699
Dfer_2695
Hypothetical protein; KEGG: gfo:GFO_2271 conserved hypothetical protein, secreted.
  
     0.685
Dfer_3620
KEGG: chu:CHU_3409 hypothetical protein.
  
    0.680
Dfer_3457
KEGG: gfo:GFO_2786 secreted protein.
  
     0.642
Dfer_3621
KEGG: chu:CHU_3410 hypothetical protein.
  
    0.636
murF
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
       0.616
Dfer_1043
KEGG: chu:CHU_2517 hypothetical protein.
  
     0.615
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.