STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_4541KEGG: chu:CHU_1568 hypothetical protein. (996 aa)    
Predicted Functional Partners:
Dfer_1135
KEGG: chu:CHU_2080 sensor histidine kinase/response regulator fusion protein; PFAM: ATP-binding region ATPase domain protein; CHASE3 domain protein; GAF domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver.
  
  
 0.784
Dfer_4545
KEGG: chu:CHU_1603 hypothetical protein.
  
     0.771
Dfer_4542
KEGG: chu:CHU_1568 hypothetical protein.
 
    
0.757
Dfer_4263
KEGG: chu:CHU_3372 hypothetical protein.
  
     0.713
Dfer_3742
KEGG: chu:CHU_0066 hypothetical protein.
  
     0.695
Dfer_0205
PFAM: Radical SAM domain protein; KEGG: chu:CHU_3263 radical SAM family Fe-S oxidoreductase.
  
     0.667
Dfer_3223
PFAM: surface antigen variable number repeat protein; KEGG: chu:CHU_2430 outer membrane protein.
  
     0.664
Dfer_5750
PFAM: surface antigen (D15); KEGG: chu:CHU_3233 WD-40-like repeat-containing protein.
  
    0.652
Dfer_5571
Signal transduction histidine kinase with CheB and CheR activity; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
  
  
 0.642
Dfer_2917
KEGG: chu:CHU_0173 gliding motility-related protein.
  
   
 0.633
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.