STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_4547Hypothetical protein; KEGG: chu:CHU_3302 surface antigen. (608 aa)    
Predicted Functional Partners:
Dfer_2973
KEGG: chu:CHU_2991 hypothetical protein.
  
     0.775
Dfer_4246
KEGG: chu:CHU_3237 hypothetical protein.
  
     0.774
Dfer_4548
KEGG: pap:PSPA7_3412 hypothetical protein.
       0.773
comB
PFAM: 2-phosphosulfolactate phosphatase; KEGG: chu:CHU_2823 2-phosphosulfolactate phosphatase; Belongs to the ComB family.
       0.709
Dfer_4465
KEGG: chu:CHU_0029 gliding motility-related protein.
  
     0.675
Dfer_4777
KEGG: chu:CHU_2217 hypothetical protein.
  
     0.637
gcvT
Glycine cleavage system T protein; The glycine cleavage system catalyzes the degradation of glycine.
       0.624
Dfer_4546
PFAM: phosphoribulokinase/uridine kinase; KEGG: chu:CHU_0115 uridine kinase; Belongs to the uridine kinase family.
       0.620
Dfer_4247
KEGG: chu:CHU_3238 hypothetical protein.
  
     0.587
Dfer_4545
KEGG: chu:CHU_1603 hypothetical protein.
       0.585
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.