STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_4562PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rrs:RoseRS_2882 short-chain dehydrogenase/reductase SDR. (265 aa)    
Predicted Functional Partners:
Dfer_4563
PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; KEGG: bxe:Bxe_A4479 dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
     
 0.786
Dfer_1893
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pca:Pcar_1139 short-chain alcohol dehydrogenase-like protein.
 
     0.768
Dfer_2897
PFAM: O-methyltransferase family 3; KEGG: fps:FP2081 O-methyltransferase.
 
  
   0.551
Dfer_4564
KEGG: gfo:GFO_2759 secreted protein.
       0.535
Dfer_2855
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ava:Ava_1691 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.498
Dfer_3966
TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: chu:CHU_2469 [acyl-carrier-protein] S- malonyltransferase.
 
 
 0.444
Dfer_4571
TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; KEGG: chu:CHU_1600 6-phosphofructokinase II; Belongs to the carbohydrate kinase PfkB family.
   
    0.418
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.