STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_4569KEGG: rxy:Rxyl_2427 hypothetical protein. (241 aa)    
Predicted Functional Partners:
Dfer_4983
KEGG: sus:Acid_1705 signal peptide and transmembrane prediction.
  
     0.673
Dfer_2514
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: fjo:Fjoh_4785 TonB-dependent receptor.
  
     0.513
Dfer_2721
PFAM: TonB-dependent receptor plug; KEGG: gfo:GFO_2846 TonB-dependent outer membrane receptor.
  
     0.501
Dfer_4568
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: chu:CHU_3709 outer membrane receptor protein.
       0.499
Dfer_1108
Putative transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: scl:sce2073 hypothetical protein.
  
     0.485
Dfer_5074
PFAM: Patatin; KEGG: mxa:MXAN_3852 patatin-like phospholipase family.
  
     0.476
Dfer_3665
KEGG: gfo:GFO_3249 hypothetical protein.
  
     0.456
Dfer_2921
KEGG: cja:CJA_2037 hypothetical protein.
  
     0.449
Dfer_1953
PFAM: NUDIX hydrolase; KEGG: hydrolase, NUDIX family protein.
  
     0.426
Dfer_5277
PFAM: GCN5-related N-acetyltransferase; KEGG: bce:BC0519 ribosomal-protein-alanine acetyltransferase.
  
     0.416
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.